Difference between revisions of "UK Biobank/file locations"
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The files are on RC in | The files are on RC in | ||
| − | < | + | <syntaxhighlight lang="bash"> |
/work/KellerLab/UKBiobank | /work/KellerLab/UKBiobank | ||
| − | </ | + | </syntaxhighlight> |
The phenotypes are in an Rdata file that can be read in with a line such as | The phenotypes are in an Rdata file that can be read in with a line such as | ||
| − | < | + | <syntaxhighlight lang="rsplus"> |
load(file="/work/KellerLab/UKBiobank/phenotypes/uk1653.Rdata") | load(file="/work/KellerLab/UKBiobank/phenotypes/uk1653.Rdata") | ||
| − | </ | + | </syntaxhighlight> |
The data is all in an object called "bd". | The data is all in an object called "bd". | ||
The raw genetic data is under the directory | The raw genetic data is under the directory | ||
| − | < | + | <syntaxhighlight lang="bash"> |
/work/KellerLab/UKBiobank/genetics/raw | /work/KellerLab/UKBiobank/genetics/raw | ||
| − | </ | + | </syntaxhighlight> |
it is in vcf.gz, bed, and UK Biobank cal format in the so named directories. | it is in vcf.gz, bed, and UK Biobank cal format in the so named directories. | ||
Latest revision as of 18:29, 29 February 2016
The files are on RC in
/work/KellerLab/UKBiobank
The phenotypes are in an Rdata file that can be read in with a line such as
load(file="/work/KellerLab/UKBiobank/phenotypes/uk1653.Rdata")
The data is all in an object called "bd".
The raw genetic data is under the directory
/work/KellerLab/UKBiobank/genetics/raw
it is in vcf.gz, bed, and UK Biobank cal format in the so named directories.