Difference between revisions of "Minnesota Twin Family Study"
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/net/twins/svrieze/vrieze-pipeline/demux/Pool_18158/intermediateFiles/S001/Makefile | /net/twins/svrieze/vrieze-pipeline/demux/Pool_18158/intermediateFiles/S001/Makefile | ||
| − | For sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam. | + | For first set of 300ish sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam. |
| + | /net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile | ||
| + | |||
| + | For second set of 180ish sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam. | ||
/net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile | /net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile | ||
Latest revision as of 15:59, 16 March 2016
For sequences from UMICH sequencing core. Example Makefile for converting fastq's for 1 sample to a single recalibrated deduped bam file:
/net/twins/svrieze/vrieze-pipeline/demux/Pool_18158/intermediateFiles/S001/Makefile
For first set of 300ish sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam.
/net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile
For second set of 180ish sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam.
/net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile