UK Biobank/file locations: Difference between revisions
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The files are on RC in | The files are on RC in | ||
< | <syntaxhighlight lang="bash"> | ||
/work/KellerLab/UKBiobank | /work/KellerLab/UKBiobank | ||
</ | </syntaxhighlight> | ||
The phenotypes are in an Rdata file that can be read in with a line such as | The phenotypes are in an Rdata file that can be read in with a line such as | ||
< | <syntaxhighlight lang="rsplus"> | ||
load(file="/work/KellerLab/UKBiobank/phenotypes/uk1653.Rdata") | load(file="/work/KellerLab/UKBiobank/phenotypes/uk1653.Rdata") | ||
</ | </syntaxhighlight> | ||
The data is all in an object called "bd". | The data is all in an object called "bd". | ||
The raw genetic data is under the directory | The raw genetic data is under the directory | ||
< | <syntaxhighlight lang="bash"> | ||
/work/KellerLab/UKBiobank/genetics/raw | /work/KellerLab/UKBiobank/genetics/raw | ||
</ | </syntaxhighlight> | ||
it is in vcf.gz, bed, and UK Biobank cal format in the so named directories. | it is in vcf.gz, bed, and UK Biobank cal format in the so named directories. | ||
Latest revision as of 18:29, 29 February 2016
The files are on RC in
/work/KellerLab/UKBiobankThe phenotypes are in an Rdata file that can be read in with a line such as
load(file="/work/KellerLab/UKBiobank/phenotypes/uk1653.Rdata")The data is all in an object called "bd".
The raw genetic data is under the directory
/work/KellerLab/UKBiobank/genetics/rawit is in vcf.gz, bed, and UK Biobank cal format in the so named directories.