Minnesota Twin Family Study: Difference between revisions
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For sequences from UMICH sequencing core. Example Makefile for converting fastq's for 1 sample to a single recalibrated deduped bam file: | |||
/net/twins/svrieze/vrieze-pipeline/demux/Pool_18158/intermediateFiles/S001/Makefile | |||
For sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam. | |||
/net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile | |||
Revision as of 15:45, 16 March 2016
For sequences from UMICH sequencing core. Example Makefile for converting fastq's for 1 sample to a single recalibrated deduped bam file:
/net/twins/svrieze/vrieze-pipeline/demux/Pool_18158/intermediateFiles/S001/Makefile
For sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam.
/net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile