Lab meeting

Spring 2020

In Spring 2020 Vrieze lab meetings have joined forces with Bill Iacono, Matt McGue, and James Lee. Exciting times!

Fall 2019 Presentation Schedule

Date	Presenter
Sept 12	Cancelled
Sept 19	??
Sept 26	?? - Scott out
Oct 3	Jackie
Oct 10	Zhen
Oct 17	ASHG - Scott, Zhen, Seon, Gretchen out
Oct 24	Shiloh
Oct 31	Stephanie
Nov 7	Gretchen
Nov 14	Seon
Nov 21	Yuri
Nov 28	Thanksgiving
Dec 5	Emily
Dec 12	Alex

Fall 2019 Lab Goals

Zhen

1. Graduate
   1. This is an all-encompassing goal
2. Find new job

Jackie

1. Complete most colocalization analyses w/ GTEx and Hancock data
2. Finalize at least one dissertation ms
3. Define new project and outline anlayses where take lead

Stephanie

1. Do written prelim
   1. Choose topic (Sept 20)
   2. Outline (Oct 10)
   3. Finish draft (Dec 20)
2. Draft polysubstance ms (Oct 7) and submit (Dec 7)
3. Prospectus -choose topic (Oct 20)

Yuri

1. Submit DEPICT ms
2. Complete most analyses parent personality project
3. Complete coursework and be a good student

Emily

1. Submit prelim written
2. Submit reaction time manuscript

Shiloh

1. Draft of Location / personality paper
2. Do well in classes

Seon

1. Prelim written "review paper" rough draft (and plan to defend in SPring 2020)
2. Resubmit and continue attempting to publish pleiotropy paper
3. Most analsyses of heritability
4. Help on GSCAN2

Emilie

1. Finishing thesis introduction
2. Getting into medical school

Alex

1. Polish up MA thesis and submit for publication
2. Do well in classes
3. Define project regarding CO-MN occupational/economic outcomes
   1. Familiarize yourself with the datasets and maybe preliminary anlayses

Spring 2019 Presentation Schedule

Date	Presenter
Feb 7	Cancelled
Feb 14	Seon
Feb 21	Welcome Weekend
Feb 28	Eric
March 7
March 14	Stephanie
March 21	Spring Break
March 28	Shiloh
April 4	Emily W
April 11	Seth Disner from VA
April 18	Yuri
April 25	Allison
May 2	Zhen

Spring 2019 Goals

Zhen

1. Try to submit endophenotype manuscript
2. Write up GSCAN2 with meta analysis results
3. Graduate in May

Seon

1. Submit GSCAN 1.5
2. Outline manuscript and complete analyses for review paper
3. Publish pleiotropy manuscript
4. Start another project, maybe on brains or something

Eric

1. Submit SUDEV 2
2. End of March-send out MS to coauthors of SUDEV 3
   1. Submit by end of semester
3. Define a third project

Allison

1. Submit theory paper on longitudinal ACE model
2. Create R package for longitudinal ACE model
3. Update Topmed phenotypes

Stephanie

1. Defend MA
2. Outline written prelim
   1. empirical element and review element
3. publish SUDEV 1
4. submit SUDEV 4: multi-substance use

Emily

1. Submit MA paperwork
2. Publish PGS manuscript
3. draft reaction time manuscript sans replication component
4. write book chapter for Cambridge handbook on intelligence
   1. learn how to use Latex
5. have talk for BGA based on follow up study to adoption and IQ project
6. maintain sanity in lecture

Yuri

1. complete DEPICT analyses
   1. learn MSI/command line skills to facilitate this
2. have talk for BGA based on genomic SEM and personality GWAS
3. recruit 100+ participants for reaction time and personality study

Fall 2018 Presentation Schedule

Date	Presenter
Sep 20
Sep 27	Zhen (GSCAN2)
Oct 4	Eric
Oct 11	Seon - James is gone
Oct 18	Scott is gone
Oct 25
Nov 1	Emily
Nov 8	Professional Development? Work-life balance? Ethics?
Nov 15	Yuri
Nov 29	Stephanie - James is gone
Dec 6	Allison

Fall 2018 Goals

Zhen

1. Identify a freeze of GSCAN2 and generate results
2. Draft of TOPMed meta-analysis
   1. Finalize meta-analysis
   2. single variant and gene-based

Seon

1. Submit pleiotropy manuscript
2. Draft of TOPMed meta-analysis
   1. Finalize meta-analysis
   2. single variant and gene-based
3. makes major life choices
4. formulate plan for new research project

Eric

1. SuDev2 submitted
2. Have preliminary co-twin control analysis results
3. Recover from ear surgery

Allison

1. Working lab github page
2. formulate plan for COTwin project
3. Finish acquiring TOPMed studies phenotypes
4. Run something

Stephanie

1. Submit SuDev1 manuscript
2. Submit Master's paperwork
3. Establish phenotypes and complete preliminary growth models for followup project with alcohol

Emily

1. Write up and submit reaction time study
2. Start personality and reaction time project
3. Complete starting DEPICT on cognition and personality GWAS

Yuri

1. Write up and submit fertility study
2. Start personality and reaction time project
3. Complete starting DEPICT on cognition and personality GWAS
4. Finish general area requirement

Spring 2018 Presentation Schedule

Date	Presenter
Jan 19
Jan 26	Zhen Liu
Feb 2	Stephanie Zellers
Feb 9	Emily Willoughby
Feb 16	Yuyao Rong
Feb 23	Vaishali Verma
March 2	David Brazel
March 9	Gargi Datta
March 16	Spring Break
March 23	Gaeul Park
March 30	Eric Thibodeau
April 6	Claire Nusbaum & Emilie Reard
April 13	Christian Norrid & Emily Clarke
April 20	Yuri Kim
April 27	Cancelled
May 4	Seonkyeong Jang & Stephanie Zellers
May 11

Spring 2018 Goals

We didn't do goals this semester.

Fall 2017 Presentation Schedule

Date	Presenter
Sept 19
Sept 26
Oct 3
Oct 10	Hannah
Oct 17
Oct 24
Oct 31	Stephanie
Nov 7	Zhen
Nov 14
Nov 21	Robbee
Nov 28	David
Dec 5	Seon-Kyeong
Dec 12	Eric
Dec 19	Gargi

Fall 2017 Goals

Zhen:

1. Finalize GSCAN GWAS Manuscript
   1. Finalize single variant results
   2. Coordinate completion of GSCAN paper
2. Finish Exome meta-analysis, get manuscript out
3. Finish GFG paper
4. Finish prelim
5. Start second project of dissertation ( trans-ethnic imputation project)
6. Write prospectus

Stephanie:

1. Have complete draft of longitudinal behavioral disinhibition manuscript to send to collaborators by 1st week in October. Get draft to Scott by Sept 25.
2. Apply for NSF GRFP by Oct 26
3. Start new project maybe DevCon

Eric:*

1. Finish CoTwins control project
2. Work on marijuana grant project
3. get experience with/learn computational stuff

Seonkyeong:

1. First year research project
   1. Generate one set of genome wide multivariate results
2. Complete coursework

Hannah:*

1. Submit thesis
2. Choose new project to start

David:

1. GSCAN exome manuscript accepted
2. Submit CoTwins manuscript
3. Rare variant imputation into UKB
4. Phenotypic imputation in UKB

Gargi:

1. Finish TopMed analysis
2. Rare variant and phenotypic imputation in UKB
3. Finish exome meta-analysis
4. Help finish GSCAN meta-analysis
   1. Locus Zoom

Robbee:*

1. Figure out when graduating/future plans
2. EA3 accepted
3. Risk paper accepted
4. Finish supplemental analysis/writing for GSCAN
5. Complete 4 sociology papers in revision
6. Launch GSCAN 2
   1. Data collection deadline at end of semester

Spring 2017 Presentation Schedule

Please sign up below to present.

Date	Presenter
Jan 30	Type name here
Feb 6	Type name here
Feb 13	Type name here
Feb 20	David
Feb 27	Zhen
Mar 6	Emma
Mar 13	Joyce
Mar 20	Hannah
Apr 10	Stephanie
Apr 17
Apr 24	Richard
May 1	Gargi

Spring 2017 Goals

David -

1. Submit GSCAN exome paper
2. have submitted manuscript of initial co-twins paper
   1. Completing QC on parental monitoring and substance use data
   2. Completing QC on location data
   3. Concordance analysis between Michigan and Colorado / trajectory
   4. Predictive analysis - location data to parental monitoring data

Zhen -

1. Do my part to get draft of GSCAN GWAS to co-authors
2. Write a dissertation proposal
3. Find a new project by end of a month

Maia -

1. revise & resubmit return of results paper
2. Finish Master's degree

Stephanie -

1. Start a new project by end of a month
2. Submit manuscript by end of semester

Hannah -

1. Graduate
2. Defend Thesis

Joyce -

1. Graduate
2. Defend Thesis

Gargi -

1. Propose a project by end of a month
2. Finalize UKBiobank pipeline
3. Take a trip to Michigan

Emma -

1. Make an outline of dissertation
2. Main analyses for UKBiobank ROH done by mid-march

Richard -

1. Have a final draft of measurement error project
2. Get Master's Degree / Do comps
3. Decide prelim or thesis for other MS

Fall 2016 Goals

Schedule

Fall 2016 Schedule