Minnesota Twin Family Study

From Vrieze Wiki
Revision as of 15:59, 16 March 2016 by Scott (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

For sequences from UMICH sequencing core. Example Makefile for converting fastq's for 1 sample to a single recalibrated deduped bam file: 

/net/twins/svrieze/vrieze-pipeline/demux/Pool_18158/intermediateFiles/S001/Makefile

For first set of 300ish sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam. 

/net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile

For second set of 180ish sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam. 

/net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile
Retrieved from "https://genome.psych.umn.edu/index.php?title=Minnesota_Twin_Family_Study&oldid=240"